This is the result of one of the Google Search that I clickd on 16 April morning and the results surprised me.
I typed : How to organise for PhD Publications
1) http://www.blogs.hss.ed.ac.uk/pubs-and-publications/2016/12/16/every-app-need-phd/
2) http://blogs.plos.org/thestudentblog/2017/03/10/organizing-papers-and-references-without-losing-your-mind/
3) http://www.nextscientist.com/phd-productivity-software/
4) http://www.raulpacheco.org/2015/09/organizing-pdfs-of-journal-articles-book-and-book-chapters/
5) https://www.mendeley.com/
This is free.
6) https://phdlife.warwick.ac.uk/2016/01/27/5-tips-on-getting-your-1st-journal-paper-published/
7) https://patthomson.net/2015/10/05/starting-the-phd-get-organised-now/
8) https://www.data.cam.ac.uk/data-management-guide/organising-your-data
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